However, crowd trouble marred the end of the semi-final duel in Malabo, as the match was suspended in the closing stages.
With the match in the final 10 minutes, their fans were forced to leave the stands and take refuge behind one of the goals after being pelted with objects from rival supporters.
Bottles could be seen scattered across the running track which surrounded the pitch.
The referee stopped the match and the players were left waiting in the middle of the pitch to find out if the match would restart, with the Equatorial Guinea players pleading with their fans to calm down.
Many of the fans left the stadium as the suspension dragged on.
The game restarted and Ghana sealed a place in the final against Ivory Coast after a penalty from Jordan Ayew and a Wakaso Mubarak strike at the end of the first half and a tap-in from Andre Ayew in the second.
The Ghana supporters appeared to be escorted by police through the tunnel, with reports of Equatorial Guinea supporters waiting for them outside the stadium.
Equatorial Guinea only stepped in to host the tournament after Morocco pulled out due to the Ebola epidemic.
Having never qualified for a World Cup, their only previous African Nations Cup campaign was in 2012 when they reached the quarter-finals.
Ghana have not won the Nations Cup since 1982, despite making the final four in the last four tournaments. They were losing semifinalists in 2008, 2012 and 2013, they were defeated in the 2010 final by Egypt.
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